:py:mod:`api.utils`
===================

.. py:module:: api.utils


Module Contents
---------------


Functions
~~~~~~~~~

.. autoapisummary::

   api.utils.remove_annotations
   api.utils.add_annotations
   api.utils.get_create_cdb_infos
   api.utils._remove_overlap
   api.utils.create_annotation
   api.utils.train_medcat
   api.utils.prep_docs
   api.utils.save_project_anno
   api.utils.env_str_to_bool



Attributes
~~~~~~~~~~

.. autoapisummary::

   api.utils.logger


.. py:data:: logger

   

.. py:function:: remove_annotations(document, project, partial=False)


.. py:function:: add_annotations(spacy_doc, user, project, document, existing_annotations, cat)


.. py:function:: get_create_cdb_infos(cdb, concept, cui, cui_info_prop, code_prop, desc_prop, model_clazz)


.. py:function:: _remove_overlap(project, document, start, end)


.. py:function:: create_annotation(source_val, selection_occurrence_index, cui, user, project, document, cat)


.. py:function:: train_medcat(cat, project, document)


.. py:function:: prep_docs(project_id, doc_ids, user_id)


.. py:function:: save_project_anno(sender, instance, **kwargs)


.. py:function:: env_str_to_bool(var, default)