api.utils

Module Contents

Functions

remove_annotations(document, project[, partial])
add_annotations(spacy_doc, user, project, document, ...)
get_create_cdb_infos(cdb, concept, cui, cui_info_prop, ...)
_remove_overlap(project, document, start, end)
create_annotation(source_val, ...)
train_medcat(cat, project, document)
prep_docs(project_id, doc_ids, user_id)
save_project_anno(sender, instance, **kwargs)
env_str_to_bool(var, default)

Attributes

logger

api.utils.logger

api.utils.remove_annotations(document, project, partial=False)

api.utils.add_annotations(spacy_doc, user, project, document, existing_annotations, cat)

api.utils.get_create_cdb_infos(cdb, concept, cui, cui_info_prop, code_prop, desc_prop, model_clazz)

api.utils._remove_overlap(project, document, start, end)

api.utils.create_annotation(source_val, selection_occurrence_index, cui, user, project, document, cat)

Parameters:

• source_val (str) –

• selection_occurrence_index (int) –

• cui (str) –

• user (django.contrib.auth.models.User) –

• project (api.models.ProjectAnnotateEntities) –

• cat (medcat.cat.CAT) –

api.utils.train_medcat(cat, project, document)

api.utils.prep_docs(project_id, doc_ids, user_id)

Parameters:

• project_id (List[int]) –

• doc_ids (List[int]) –

• user_id (int) –

api.utils.save_project_anno(sender, instance, **kwargs)

api.utils.env_str_to_bool(var, default)

Parameters:

• var (str) –

• default (bool) –